楚雄师范学院学报 ›› 2026, Vol. 41 ›› Issue (3): 120-125.

• 生物学 • 上一篇    下一篇

栓果芹属质体基因组特征及系统位置

刘常坤1, 李康杰1, 宋博妮2   

  1. 1.楚雄师范学院 农学院,云南 楚雄 675000;
    2.西北师范大学 生命科学学院,甘肃 兰州 730070
  • 收稿日期:2026-02-13 出版日期:2026-05-20 发布日期:2026-07-22
  • 作者简介:刘常坤(1994―),男,博士,讲师,研究方向为植物系统分类。
  • 基金资助:
    云南省基础研究计划项目(No. 202501AU070186); 楚雄师范学院博士科研启动项目(No. BSQD2311)

Plastome Characteristics and Phylogenetic Position of Cortiella

Liu Changkun1, Li Kangjie1, Song Boni2   

  1. 1. College of Agronomy, Chuxiong Normal University, Chuxiong, Yunnan Province 675000, China;
    2. College of Life Sciences, Northwest Normal University, Lanzhou, Gansu Province 730070, China
  • Received:2026-02-13 Online:2026-05-20 Published:2026-07-22

摘要: 栓果芹属是伞形科亮蛇床族的一个小属,但该属的质体基因组特征和族内系统位置尚不清楚。本研究以Geneious、codonW和MISA软件分析研究者以往完成测序的栓果芹质体基因组,并在扩大亮蛇床族成员取样(约覆盖51%的属)的基础上基于质体基因组数据进行最大似然法和贝叶斯法分析。结果显示,栓果芹质体基因组呈一个典型的四分环状结构,共编码128个基因,偏好使用以A/U结尾的密码子,简单重复序列主要由A/T组成且大部分位于大单拷贝区,这与亮蛇床族其他成员一致,表明栓果芹属质体基因组高度保守,质体基因组长度在族内属间却存在明显变异,这可能主要是反向重复区扩张造成的。此外,基于质体基因组共有的79个蛋白质编码区构建的最大似然树和贝叶斯树拓扑结构一致,在当前取样框架下以较高的支持率阐明栓果芹属在亮蛇床族内的系统位置。本研究丰富了栓果芹属的遗传资料,也为该属后续系统发育和分类研究奠定基础。

关键词: 伞形科, 栓果芹, 质体基因组, 系统发育

Abstract: Cortiella is a small genus of the tribe Selineae (Apiaceae), yet its plastome characteristics and phylogenetic position within the tribe remain unclear. In this study, we analyzed the previously sequenced plastome of C. hookeri using Geneious, codonW, and MISA software. Furthermore, we performed maximum likelihood and Bayesian inference analyses based on plastome data, with expanded taxon sampling covering approximately 51% of genera in Selineae. The results showed that the C. hookeri plastome exhibited a typical quadripartite circular structure, encoding 113 unique genes, with a preferred usage of A/U-ending codons. The simple sequence repeats of plastome were mainly composed of A/T and mostly located in the large single copy region. These features were consistent with those of other members of Selineae, indicating Cortiella plastome was highly conserved. Nevertheless, the plastome size was varied across genera within the tribe, which may be mainly attributed to the expansion of the inverted repeat regions. Moreover, the maximum likelihood and Bayesian trees reconstructed from the 79 shared protein coding regions of plastome displayed identical topologies and clarified the phylogenetic position of Cortiella within Selineae with high support values. This study enriches the genetic resources of Cortiella and lays a foundation for future phylogenetic and taxonomic research on this genus.

Key words: Apiaceae, Cortiella, plastome, phylogeny

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